Ran into problem: after backing up, i upgraded from jailbroken 4.01 to 4.1. I did via iTunes restore. It failed, and seemed to be stuck in recovery mode. After several retries, I used tinyumbrella to kick out of recovery, then restored from backup. Seemed fine. Everything appeared as before except on 4.1 now. All apps and settings restored. I jailrbroke 4.1 and noticed some icons were white. After reboot all was well. I downloaded aptbackup and restored all my apps. Then all my default apps disappeared leaving just the jailbroken apps. I fixed with a sync to iTunes. Now all is fine except I need to reorganize.
I noticed in ifile, there are random letters and numbers after many folders, the theme folder is such one. It is now "stash/themes.0j6sEk". Is this going to be a problem? Why is this happening? I noticed when using iphonebrowser, it couldn't find my theme dir. Prob because of the extra stuff after "theme"
Jason