Originally Posted by
Beyond Fire From what I understand you just need to give it some time before the tweaks start appearing again. I've also noticed not all tweaks are there but some are slowly appearing again. As far as updating cydia substrate, that was done to install tweaks that required 9.5001.
Oh I get what you saying but yeah CS is useless b/c the tweaks haven't showed up yet. I'll wait until the morning, hopefully in a few hours they appear, if not i'll post here again. Thanks for your help.
Edit: I followed this and it worked:
Try running iCleaner (found in cydia), and make sure all toggles are enabled. After the respring, go into cydia and refresh in the changes tab.