As the thread title says, anyone else having the problem, music over bluetooth all good but calls are so distorted you can't use it, happening in my vehicle and a uniden handset, my 5C, 6S plus were all good, looks like it is after 9.3.1 update with the SE. Have a ticket in with Apple but don't like my chances. I drive thousands of Km's and really need b/tooth. My problem is exactly same as those in these 2 threads.
https://discussions.apple.com/thread/7521352?start=15&tstart=0
Distorted Audio On Phone Calls Over Bluetooth (IPHONE SE) | MacRumors Forums
https://discussions.apple.com/thread/7521352?start=15&tstart=0
Distorted Audio On Phone Calls Over Bluetooth (IPHONE SE) | MacRumors Forums